PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc000462.1_g00010.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family NAC
Protein Properties Length: 332aa    MW: 36818.5 Da    PI: 5.2308
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc000462.1_g00010.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM1713.8e-53321781128
                      NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk...............kvka.eekewyfFskrdkkyat 70 
                              lppGfrFhPtdee++v+yLkkkv++  ++   +i evd++k+ePwdLp                k    ++kew+fF ++d+ky+t
  Itr_sc000462.1_g00010.1  32 LPPGFRFHPTDEEIIVDYLKKKVTDIAFSS-VAIGEVDLNKCEPWDLPIlmlmggdfeliagkaK--MmGKKEWFFFWQKDRKYPT 114
                              79*************************988.67***************55799999999888532..23778************** PP

                      NAM  71 gkrknratksgyWkatgkdkevlsk......kgelvglkktLvfykgrapkgektdWvmheyrl 128
                              g+r+nrat+sgyWkatgkdke++++      +g+ vg+kktLvfykgrapkg+kt+W+mheyrl
  Itr_sc000462.1_g00010.1 115 GTRTNRATESGYWKATGKDKEIFQSgrgsssSGSIVGMKKTLVFYKGRAPKGQKTNWIMHEYRL 178
                              ************************97776666666***************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019412.75E-5727199IPR003441NAC domain
PROSITE profilePS5100556.23632199IPR003441NAC domain
PfamPF023658.5E-2833178IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 332 aa     Download sequence    Send to blast
METVPETASF DPLVSHGGAD TGQAAEAAVV YLPPGFRFHP TDEEIIVDYL KKKVTDIAFS  60
SVAIGEVDLN KCEPWDLPIL MLMGGDFELI AGKAKMMGKK EWFFFWQKDR KYPTGTRTNR  120
ATESGYWKAT GKDKEIFQSG RGSSSSGSIV GMKKTLVFYK GRAPKGQKTN WIMHEYRLHG  180
TQFYNTTREE WVVCRVFHKQ TTGVVYMRRS PPRNDAVSRI DSISVADHLL PPLTDFPDYS  240
DDNPPAPPLL PCSLTLQNPP SALFYPPNPN SDTATAALKA ESVSQDAAGV VSPDVTPTEI  300
SWELPDGGGA LGGLYDDSMA DLDRYYSFLN YY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3swm_A5e-503220320172NAC domain-containing protein 19
3swm_B5e-503220320172NAC domain-containing protein 19
3swm_C5e-503220320172NAC domain-containing protein 19
3swm_D5e-503220320172NAC domain-containing protein 19
3swp_A5e-503220320172NAC domain-containing protein 19
3swp_B5e-503220320172NAC domain-containing protein 19
3swp_C5e-503220320172NAC domain-containing protein 19
3swp_D5e-503220320172NAC domain-containing protein 19
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011078584.17e-83PREDICTED: NAC domain-containing protein 21/22-like
SwissprotQ9FLR32e-75NAC79_ARATH; NAC domain-containing protein 79
TrEMBLA0A087G8633e-80A0A087G863_ARAAL; Uncharacterized protein
STRINGAT5G18270.12e-78(Arabidopsis thaliana)
STRINGBra006449.1-P2e-78(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA15224279
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G18270.21e-80Arabidopsis NAC domain containing protein 87